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Crystal Structure of Oxidized Form from Saccharomyces cerevisiae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 4.6 289 0.2M ammonium sulfate, 0.1M sodium acetate buffer, 30%(w/v) PEG mmE 2000, pH 4.6, EVAPORATION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.49 50.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.151 α = 90 b = 83.151 β = 90 c = 64.732 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54179
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.376 30.165 98.3 9601 9445 10.5 110.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.38 30.16 2 9601 8991 453 98.29 0.20818 0.20583 0.2046 0.25861 0.1956 RANDOM 25.943
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.22 0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.339 r_dihedral_angle_4_deg 26.717 r_dihedral_angle_3_deg 16.313 r_scangle_it 6.383 r_scbond_it 4.333 r_dihedral_angle_1_deg 4.1 r_mcangle_it 2.963 r_mcbond_it 2.57 r_angle_refined_deg 1.591 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.339 r_dihedral_angle_4_deg 26.717 r_dihedral_angle_3_deg 16.313 r_scangle_it 6.383 r_scbond_it 4.333 r_dihedral_angle_1_deg 4.1 r_mcangle_it 2.963 r_mcbond_it 2.57 r_angle_refined_deg 1.591 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.255 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.194 r_chiral_restr 0.107 r_symmetry_hbond_refined 0.076 r_bond_refined_d 0.022 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1570 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction MOLREP phasing