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Crystal structure of PhnF C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 297 20% PEG3350, 0.2M Mg Formate, 50mMtris pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.08 40.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.765 α = 90 b = 51.572 β = 103.64 c = 63.961 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-10-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97944 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.9 0.068 33.1 32745 32745 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 99.9 0.183 2.75
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 50 31080 31080 1643 99.91 0.18958 0.18958 0.18688 0.1869 0.24121 0.2386 RANDOM 25.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.78 0.52 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.209 r_dihedral_angle_4_deg 22.506 r_dihedral_angle_3_deg 15.458 r_dihedral_angle_1_deg 7.214 r_scangle_it 5.481 r_scbond_it 3.631 r_mcangle_it 2.608 r_angle_refined_deg 2.332 r_mcbond_it 1.681 r_symmetry_vdw_refined 0.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.209 r_dihedral_angle_4_deg 22.506 r_dihedral_angle_3_deg 15.458 r_dihedral_angle_1_deg 7.214 r_scangle_it 5.481 r_scbond_it 3.631 r_mcangle_it 2.608 r_angle_refined_deg 2.332 r_mcbond_it 1.681 r_symmetry_vdw_refined 0.361 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.292 r_nbd_refined 0.235 r_xyhbond_nbd_refined 0.187 r_chiral_restr 0.181 r_bond_refined_d 0.025 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2511 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing