☰ Navigation Tabs
Crystal structure of Molybdenum cofactor biosynthesis protein Mog from Shewanella oneidensis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.2 M Ammonium sulfate
0.1 M HEPES pH 7.5
25 % PEG3350, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.15 42.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.91 α = 90 b = 65.91 β = 90 c = 101.212 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97942 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 98.6 0.115 28.9 6.1 38756 38213 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 98.3 0.511 3.94 5.3 3780
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 50 36782 36271 1905 98.61 0.17979 0.17979 0.17728 0.1795 0.22845 0.1718 RANDOM 24.975
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.22 -0.44 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.097 r_dihedral_angle_3_deg 15.622 r_dihedral_angle_4_deg 13.663 r_dihedral_angle_1_deg 5.451 r_scangle_it 3.756 r_scbond_it 2.728 r_angle_refined_deg 1.501 r_mcangle_it 1.331 r_mcbond_it 0.964 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.097 r_dihedral_angle_3_deg 15.622 r_dihedral_angle_4_deg 13.663 r_dihedral_angle_1_deg 5.451 r_scangle_it 3.756 r_scbond_it 2.728 r_angle_refined_deg 1.501 r_mcangle_it 1.331 r_mcbond_it 0.964 r_nbtor_refined 0.311 r_nbd_refined 0.219 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.183 r_symmetry_hbond_refined 0.165 r_chiral_restr 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3951 Nucleic Acid Atoms Solvent Atoms 424 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling