☰ Navigation Tabs
Crystal structure of the catalytic domain of Mos1 mariner transposase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 290 24-26% PEG 4000, 0.1M Tris, 0.005M MgCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 1.85 33.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.243 α = 90 b = 44.243 β = 90 c = 206.047 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-24 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2004-06-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97624 ESRF ID29 2 SYNCHROTRON ESRF BEAMLINE ID29 0.97868, 0.97939, 0.9750 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.25 20 97.1 0.13 13 10257
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.35 85.4 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 20 10257 9749 490 97.68 0.1934 0.19345 0.18943 0.1885 0.27685 0.2723 RANDOM 34.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.52 -0.52 1.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.876 r_dihedral_angle_4_deg 20.651 r_dihedral_angle_3_deg 18.797 r_dihedral_angle_1_deg 6.755 r_scangle_it 6.102 r_scbond_it 3.812 r_mcangle_it 2.908 r_angle_refined_deg 2.017 r_mcbond_it 1.746 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.876 r_dihedral_angle_4_deg 20.651 r_dihedral_angle_3_deg 18.797 r_dihedral_angle_1_deg 6.755 r_scangle_it 6.102 r_scbond_it 3.812 r_mcangle_it 2.908 r_angle_refined_deg 2.017 r_mcbond_it 1.746 r_nbtor_refined 0.319 r_nbd_refined 0.242 r_symmetry_vdw_refined 0.23 r_symmetry_hbond_refined 0.223 r_xyhbond_nbd_refined 0.194 r_chiral_restr 0.143 r_bond_refined_d 0.025 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1742 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing