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CatM effector binding domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F6G PDB Entry 2F6G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 288 PEG 4000, ammonium sulfate, sodium acetate, NaCl, tris, glycerol, imidazole, microbatch under oil, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.6 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.184 α = 90 b = 75.529 β = 90 c = 102.189 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.00727 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 60.746 93.9 0.056 29.7 10.3 22581 22581 20.47029
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 88.7 88.7 0.73 7.5 2107
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB Entry 2F6G 1.9 60.746 18410 18410 1007 94.441 0.175 0.175 0.1718 0.1818 0.2399 0.2445 Random 19.847
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.296 0.682 -0.978
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.543 r_dihedral_angle_other_3_deg 16.097 r_dihedral_angle_3_deg 12.191 r_dihedral_angle_4_deg 11.931 r_dihedral_angle_1_deg 5.391 r_scangle_it 3.161 r_scbond_it 2.362 r_scangle_other 1.312 r_mcangle_it 1.17 r_angle_refined_deg 1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.543 r_dihedral_angle_other_3_deg 16.097 r_dihedral_angle_3_deg 12.191 r_dihedral_angle_4_deg 11.931 r_dihedral_angle_1_deg 5.391 r_scangle_it 3.161 r_scbond_it 2.362 r_scangle_other 1.312 r_mcangle_it 1.17 r_angle_refined_deg 1.08 r_mcbond_it 0.778 r_scbond_other 0.74 r_angle_other_deg 0.727 r_mcangle_other 0.499 r_symmetry_vdw_other 0.215 r_nbd_refined 0.183 r_nbtor_refined 0.168 r_nbd_other 0.157 r_symmetry_vdw_refined 0.149 r_xyhbond_nbd_refined 0.124 r_mcbond_other 0.081 r_symmetry_hbond_refined 0.078 r_nbtor_other 0.077 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1688 Nucleic Acid Atoms Solvent Atoms 359 Heterogen Atoms 21
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing