X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2F6GPDB Entry 2F6G

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1microbatch under oil288PEG 4000, ammonium sulfate, sodium acetate, NaCl, tris, glycerol, imidazole, microbatch under oil, temperature 288K
Crystal Properties
Matthews coefficientSolvent content
2.652.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.184α = 90
b = 75.529β = 90
c = 102.189γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM1.00727APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.860.74693.90.05629.710.3225812258120.47029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8688.788.70.737.52107

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB Entry 2F6G1.960.7461841018410100794.4410.1750.1750.17180.2399Random19.847
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.2960.682-0.978
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.543
r_dihedral_angle_other_3_deg16.097
r_dihedral_angle_3_deg12.191
r_dihedral_angle_4_deg11.931
r_dihedral_angle_1_deg5.391
r_scangle_it3.161
r_scbond_it2.362
r_scangle_other1.312
r_mcangle_it1.17
r_angle_refined_deg1.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.543
r_dihedral_angle_other_3_deg16.097
r_dihedral_angle_3_deg12.191
r_dihedral_angle_4_deg11.931
r_dihedral_angle_1_deg5.391
r_scangle_it3.161
r_scbond_it2.362
r_scangle_other1.312
r_mcangle_it1.17
r_angle_refined_deg1.08
r_mcbond_it0.778
r_scbond_other0.74
r_angle_other_deg0.727
r_mcangle_other0.499
r_symmetry_vdw_other0.215
r_nbd_refined0.183
r_nbtor_refined0.168
r_nbd_other0.157
r_symmetry_vdw_refined0.149
r_xyhbond_nbd_refined0.124
r_mcbond_other0.081
r_symmetry_hbond_refined0.078
r_nbtor_other0.077
r_chiral_restr0.059
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1688
Nucleic Acid Atoms
Solvent Atoms359
Heterogen Atoms21

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
MOLREPphasing