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BenM effector binding domain- SeMet derivative
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 288 PEG 4000, ammonium sulfate, sodium acetate, NaCl, tris, glycerol, imidazole, microbatch under oil, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.6 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.09 α = 90 b = 66.702 β = 90 c = 117.849 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97935 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 58.926 99.6 0.069 49.6 11.4 35252 24.31766
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.6 98.6 0.221 9.6 3427
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.001 58.926 33427 35170 1743 99.451 0.183 0.183 0.1811 0.19 0.2267 0.2391 Random 26.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.688 -0.832 -2.856
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.062 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 5.792 r_scangle_it 3.831 r_scbond_it 2.541 r_scangle_other 1.731 r_mcangle_it 1.55 r_angle_refined_deg 1.048 r_mcbond_it 0.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.062 r_dihedral_angle_4_deg 14.747 r_dihedral_angle_3_deg 13.523 r_dihedral_angle_1_deg 5.792 r_scangle_it 3.831 r_scbond_it 2.541 r_scangle_other 1.731 r_mcangle_it 1.55 r_angle_refined_deg 1.048 r_mcbond_it 0.732 r_angle_other_deg 0.719 r_scbond_other 0.701 r_mcangle_other 0.697 r_symmetry_vdw_other 0.208 r_nbd_refined 0.178 r_nbtor_refined 0.166 r_symmetry_hbond_refined 0.166 r_nbd_other 0.163 r_symmetry_vdw_refined 0.119 r_xyhbond_nbd_refined 0.116 r_nbtor_other 0.079 r_mcbond_other 0.069 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3532 Nucleic Acid Atoms Solvent Atoms 487 Heterogen Atoms 15
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction