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Reaction geometry and thermostability of pyranose 2-oxidase from the white-rot fungus Peniophora sp., Thermostability mutant E542K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 100 mM MES/NaOH, pH=6.0, 19% PEG 6000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.931 α = 90 b = 101.931 β = 90 c = 118.602 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8123 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 77 100 54760 54750 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.88 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.84 76.7 2 54750 52011 2738 100 0.15184 0.15 0.1645 0.1864 0.1935 RANDOM 5.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.44 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.57 r_dihedral_angle_4_deg 17.262 r_dihedral_angle_3_deg 12.822 r_dihedral_angle_1_deg 6.876 r_scangle_it 2.797 r_scbond_it 1.763 r_angle_refined_deg 1.456 r_mcangle_it 1.027 r_mcbond_it 0.622 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.57 r_dihedral_angle_4_deg 17.262 r_dihedral_angle_3_deg 12.822 r_dihedral_angle_1_deg 6.876 r_scangle_it 2.797 r_scbond_it 1.763 r_angle_refined_deg 1.456 r_mcangle_it 1.027 r_mcbond_it 0.622 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.196 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.094 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4549 Nucleic Acid Atoms Solvent Atoms 595 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement MAR345 data collection APRV data scaling EPMR phasing