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30S ribosome + designer antibiotic
Crystallization Crystal Properties Matthews coefficient Solvent content 4.62 73.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 403.323 α = 90 b = 403.323 β = 90 c = 176.685 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2002-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.991 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 30 97.4 0.161 140000 138452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.8 3.93 96.2 0.68
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.8 30 138452 131434 6940 97.25 0.26179 0.26179 0.25902 0.31456 RANDOM 84.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.03 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.841 r_mcangle_it 2.944 r_scangle_it 1.905 r_angle_refined_deg 1.635 r_mcbond_it 1.618 r_scbond_it 1.109 r_metal_ion_refined 0.313 r_nbd_refined 0.292 r_xyhbond_nbd_refined 0.243 r_symmetry_hbond_refined 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 12.841 r_mcangle_it 2.944 r_scangle_it 1.905 r_angle_refined_deg 1.635 r_mcbond_it 1.618 r_scbond_it 1.109 r_metal_ion_refined 0.313 r_nbd_refined 0.292 r_xyhbond_nbd_refined 0.243 r_symmetry_hbond_refined 0.243 r_symmetry_vdw_refined 0.215 r_chiral_restr 0.101 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19076 Nucleic Acid Atoms 32471 Solvent Atoms Heterogen Atoms 181
Software Software Software Name Purpose REFMAC refinement