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Crystal structure of a putative acetamidase (tm0119) from thermotoga maritima msb8 at 2.50 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 10.0% Glycerol, 5.0% PEG-3000, 30.0% PEG-400, 0.1M Citrate, pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.44 54.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.257 α = 90 b = 104.068 β = 90 c = 154.945 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2005-04-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.89194, 0.97936 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 29.7 99.9 0.137 0.137 4.8 3.7 45660
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.56 100 0.923 0.923 0.7 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.5 29.7 43287 2305 99.85 0.194 0.192 0.1946 0.242 0.2481 RANDOM 23.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -2.24 2.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.082 r_dihedral_angle_4_deg 14.495 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_1_deg 6.451 r_scangle_it 5.606 r_scbond_it 3.942 r_mcangle_it 1.901 r_mcbond_it 1.298 r_angle_refined_deg 1.269 r_angle_other_deg 0.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.082 r_dihedral_angle_4_deg 14.495 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_1_deg 6.451 r_scangle_it 5.606 r_scbond_it 3.942 r_mcangle_it 1.901 r_mcbond_it 1.298 r_angle_refined_deg 1.269 r_angle_other_deg 0.839 r_mcbond_other 0.298 r_symmetry_vdw_other 0.269 r_nbd_refined 0.209 r_nbd_other 0.184 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.128 r_symmetry_vdw_refined 0.107 r_nbtor_other 0.084 r_chiral_restr 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_metal_ion_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8355 Nucleic Acid Atoms Solvent Atoms 163 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXE model building SHARP phasing