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Crystal structure of a putative phosphatase (nma1982) from neisseria meningitidis z2491 at 1.41 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 8.5 277 0.2M MgCl2, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.006356 38.694843
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.278 α = 90 b = 33.466 β = 96.18 c = 59.899 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 COLLIMATING MIRROR, DCM, TOROIDAL FOCUSING MIRROR 2005-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.019951, 0.979741 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 18.62 83.4 0.041 0.041 9 3.1 46247
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.41 1.45 32.3 32.3 0.276 0.276 2.5 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.41 18.62 43885 2352 83.43 0.201 0.20104 0.2 0.2078 0.228 0.2378 RANDOM 14.814
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.39 0.32 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.039 r_dihedral_angle_4_deg 12.222 r_dihedral_angle_3_deg 12.054 r_scangle_it 6.447 r_dihedral_angle_1_deg 6.128 r_scbond_it 4.587 r_mcangle_it 2.903 r_mcbond_it 1.959 r_angle_refined_deg 1.452 r_angle_other_deg 0.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.039 r_dihedral_angle_4_deg 12.222 r_dihedral_angle_3_deg 12.054 r_scangle_it 6.447 r_dihedral_angle_1_deg 6.128 r_scbond_it 4.587 r_mcangle_it 2.903 r_mcbond_it 1.959 r_angle_refined_deg 1.452 r_angle_other_deg 0.837 r_mcbond_other 0.502 r_symmetry_vdw_other 0.307 r_symmetry_vdw_refined 0.29 r_nbd_refined 0.262 r_nbd_other 0.195 r_symmetry_hbond_refined 0.182 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.175 r_nbtor_other 0.083 r_chiral_restr 0.079 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2239 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SOLVE phasing