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X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G16990
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 Protein solution (15 mg/ml protein, 0.025 M sodium chloride, 0.10 M Tris pH 7.5) mixed in a 1:1
ratio with the well solution (0.055 M sodium acetate pH 4.5, 1.05 M ammonium sulfate), temperature 277 K, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.78 55.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.7 α = 90 b = 62.7 β = 90 c = 287.621 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Bent cylindrical Si-mirror (Rh coating) 2003-06-26 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97912 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.08 43.81 84.9 0.065 22.303 9.5 30515
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.08 2.15 44.8 0.26 6.376 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 43.81 28535 1519 86.45 0.17306 0.16979 0.1718 0.23355 0.2324 RANDOM 31.599
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.09 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.489 r_dihedral_angle_4_deg 19.87 r_dihedral_angle_3_deg 15.387 r_scangle_it 6.667 r_scbond_it 4.891 r_dihedral_angle_1_deg 4.889 r_mcangle_it 2.595 r_mcbond_it 1.694 r_angle_refined_deg 1.476 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.489 r_dihedral_angle_4_deg 19.87 r_dihedral_angle_3_deg 15.387 r_scangle_it 6.667 r_scbond_it 4.891 r_dihedral_angle_1_deg 4.889 r_mcangle_it 2.595 r_mcbond_it 1.694 r_angle_refined_deg 1.476 r_nbtor_refined 0.306 r_symmetry_vdw_refined 0.238 r_symmetry_hbond_refined 0.228 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.102 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3402 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 40
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection