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Crystal Structure of molybdopterin-guanine biosynthesis protein B (mobB)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.51 298 20% Peg 3350, 0.1M Bis-Tris, additive 0.1M Praseodymium (III) acetate, pH 5.51, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.02 39.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.98 α = 90 b = 63.93 β = 95.3 c = 66.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2005-09-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.979 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 92.1 0.099 14.4 9.8 17059 17059
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 43.5 0.172 4 798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 50 15707 15707 1337 92.1 0.1912 0.1912 0.1861 0.1865 0.2534 0.2572 RANDOM 19.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.49 0.84 0.31 -0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.804 r_dihedral_angle_4_deg 21.727 r_dihedral_angle_3_deg 18.675 r_dihedral_angle_1_deg 7.596 r_scangle_it 5.234 r_scbond_it 3.248 r_mcangle_it 2.087 r_angle_refined_deg 1.854 r_mcbond_it 1.142 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.804 r_dihedral_angle_4_deg 21.727 r_dihedral_angle_3_deg 18.675 r_dihedral_angle_1_deg 7.596 r_scangle_it 5.234 r_scbond_it 3.248 r_mcangle_it 2.087 r_angle_refined_deg 1.854 r_mcbond_it 1.142 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.219 r_symmetry_hbond_refined 0.218 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.126 r_bond_refined_d 0.021 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2390 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement CBASS data collection SCALEPACK data scaling SOLVE phasing