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Crystal structure of Synechocystis arogenate dehydrogenase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 294 1 uL prot + 1 uL reservoir (PEG 6000 30%, 0.1 M tris-HCl) + 2uL NADP 2 mM, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 294K, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.02 39.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.15 α = 90 b = 70.85 β = 90.3 c = 104.49 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-10-12 M SINGLE WAVELENGTH 2 1 x-ray M 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.55 20 97 0.046 17.06 4.09 135727
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.55 1.61 85.5 0.426 3.01 3.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.55 20 132172 131035 6895 99.14 0.1903 0.18863 0.1894 0.22191 0.1888 RANDOM 17.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.01 -0.07 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.564 r_dihedral_angle_4_deg 18.566 r_dihedral_angle_3_deg 14.118 r_dihedral_angle_1_deg 5.275 r_scangle_it 3.099 r_scbond_it 2.06 r_angle_refined_deg 1.665 r_mcangle_it 1.23 r_mcbond_it 0.819 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.564 r_dihedral_angle_4_deg 18.566 r_dihedral_angle_3_deg 14.118 r_dihedral_angle_1_deg 5.275 r_scangle_it 3.099 r_scbond_it 2.06 r_angle_refined_deg 1.665 r_mcangle_it 1.23 r_mcbond_it 0.819 r_nbtor_refined 0.304 r_symmetry_hbond_refined 0.235 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.217 r_chiral_restr 0.15 r_xyhbond_nbd_other 0.14 r_xyhbond_nbd_refined 0.133 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8498 Nucleic Acid Atoms Solvent Atoms 424 Heterogen Atoms 208
Software Software Software Name Purpose REFMAC refinement ProDC data collection XDS data scaling SHARP phasing