☰ Navigation Tabs
Crystal Structure of LacC from Enterococcus Faecalis in complex with ATP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 1.4M NACITRATE, 0.1M TRIS PH 8.5, 0.01M ATP, CRYO-XYLITOL, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.67 53.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.463 α = 90 b = 62.739 β = 99.91 c = 93.454 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A .9791 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20 98 0.065 11.2 3.2 57959 57959 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 96.2 0.281 2.37 2.5 5669
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 20 -3 57813 57813 2911 98.01 0.20308 0.20308 0.20111 0.2052 0.23996 0.2424 RANDOM 25.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 -0.06 1.49 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.176 r_dihedral_angle_3_deg 13.798 r_dihedral_angle_4_deg 12.511 r_dihedral_angle_1_deg 5.833 r_scangle_it 2.712 r_scbond_it 1.91 r_angle_refined_deg 1.18 r_mcangle_it 1.168 r_mcbond_it 1.104 r_angle_other_deg 0.858
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.176 r_dihedral_angle_3_deg 13.798 r_dihedral_angle_4_deg 12.511 r_dihedral_angle_1_deg 5.833 r_scangle_it 2.712 r_scbond_it 1.91 r_angle_refined_deg 1.18 r_mcangle_it 1.168 r_mcbond_it 1.104 r_angle_other_deg 0.858 r_symmetry_vdw_other 0.205 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.177 r_nbd_other 0.168 r_nbtor_refined 0.159 r_symmetry_vdw_refined 0.151 r_symmetry_hbond_refined 0.149 r_mcbond_other 0.138 r_nbtor_other 0.079 r_chiral_restr 0.067 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4815 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing