☰ Navigation Tabs
Structure of the family43 beta-Xylosidase D15G mutant from geobacillus stearothermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 285 17% PEG 6000, 0.1M MES, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 285K
Crystal Properties Matthews coefficient Solvent content 2.3 46.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.175 α = 90 b = 140.175 β = 90 c = 232.322 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2005-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 0.9239 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 20 99.8 126702 126449
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.18 98.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 20 126702 125972 6323 99.47 0.203 0.203 0.199 0.2001 0.276 0.2811 RANDOM 32.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.75 -0.75 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.748 r_dihedral_angle_4_deg 16.78 r_dihedral_angle_3_deg 15.122 r_dihedral_angle_1_deg 6.454 r_scangle_it 1.616 r_angle_refined_deg 1.3 r_scbond_it 1.029 r_mcangle_it 0.873 r_mcbond_it 0.495 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.748 r_dihedral_angle_4_deg 16.78 r_dihedral_angle_3_deg 15.122 r_dihedral_angle_1_deg 6.454 r_scangle_it 1.616 r_angle_refined_deg 1.3 r_scbond_it 1.029 r_mcangle_it 0.873 r_mcbond_it 0.495 r_nbtor_refined 0.307 r_nbd_refined 0.186 r_symmetry_hbond_refined 0.174 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.148 r_metal_ion_refined 0.128 r_chiral_restr 0.098 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17488 Nucleic Acid Atoms Solvent Atoms 2087 Heterogen Atoms 64
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction