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Crystal structure of a putative nucleotidyltransferase (tm1012) from Thermotoga maritima at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.9 277 0.2M KCl, 20.0% PEG-3350, No Buffer, pH 6.9, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.16 42.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.56 α = 74.11 b = 36.21 β = 86.38 c = 39.28 γ = 79.69
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2005-08-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.95372, 0.97960, 0.97942 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.643 88.8 0.028 18.43 3.75 20185
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 50.4 50.4 0.095 6.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 29.66 19130 1055 90.08 0.147 0.14658 0.145 0.1572 0.18 0.193 RANDOM 9.142
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.2 0.03 -0.19 0.05 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 18.261 r_dihedral_angle_3_deg 11.438 r_scangle_it 6.283 r_dihedral_angle_1_deg 5.902 r_scbond_it 4.343 r_mcangle_it 2.543 r_mcbond_it 2.077 r_angle_refined_deg 1.486 r_angle_other_deg 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.229 r_dihedral_angle_4_deg 18.261 r_dihedral_angle_3_deg 11.438 r_scangle_it 6.283 r_dihedral_angle_1_deg 5.902 r_scbond_it 4.343 r_mcangle_it 2.543 r_mcbond_it 2.077 r_angle_refined_deg 1.486 r_angle_other_deg 0.822 r_mcbond_other 0.451 r_nbd_refined 0.226 r_symmetry_vdw_other 0.194 r_symmetry_hbond_refined 0.191 r_nbd_other 0.19 r_symmetry_vdw_refined 0.186 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.093 r_nbtor_other 0.082 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1284 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SOLVE phasing