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Crystal Structure of the Putative 2-Dehydropantoate 2-Reductase from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 289 100mM Tris/HCL, 30% PEG400, 200mM MgCL2, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.96 58.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.165 α = 90 b = 89.16 β = 90 c = 104.754 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 33.95 92.9 0.089 10.6 11.7 54445 53058
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 59.8 0.386 4.16 9.3 3370
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 33.95 47668 47668 5345 92.9 0.18452 0.18452 0.18116 0.1805 0.21442 0.2149 RANDOM 28.197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.34 -0.56 -1.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.486 r_dihedral_angle_4_deg 22.012 r_dihedral_angle_3_deg 13.98 r_dihedral_angle_1_deg 5.414 r_scangle_it 3.392 r_scbond_it 2.178 r_mcangle_it 1.209 r_angle_refined_deg 1.204 r_mcbond_it 0.781 r_nbd_refined 0.199
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.486 r_dihedral_angle_4_deg 22.012 r_dihedral_angle_3_deg 13.98 r_dihedral_angle_1_deg 5.414 r_scangle_it 3.392 r_scbond_it 2.178 r_mcangle_it 1.209 r_angle_refined_deg 1.204 r_mcbond_it 0.781 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.163 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.087 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4845 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MLPHARE phasing SHELXD phasing