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Crystal Structure of the PEBP-like Protein of Unknown Function HP0218 from Helicobacter pylori
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 0.1M Bis-Tris PH6.0, 0.2M Ammonium Sulphate, 20%PEG4K, 2% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.93 68.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.312 α = 90 b = 102.266 β = 90 c = 143.047 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 mirrors 2005-04-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97922 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.59 45.75 97.6 0.191 4.9 11.1 48287 47122
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.59 2.68 79.7 0.798 2.2 8.6 3786
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.59 45.75 41287 41287 4630 97.11 0.2235 0.2235 0.2191 0.2189 0.26248 0.2603 RANDOM 28.218
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -1.79 1.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.364 r_dihedral_angle_4_deg 19.713 r_dihedral_angle_3_deg 19.527 r_dihedral_angle_1_deg 6.58 r_scangle_it 2.848 r_scbond_it 1.842 r_angle_refined_deg 1.441 r_mcangle_it 1.227 r_mcbond_it 0.828 r_symmetry_hbond_refined 0.266
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.364 r_dihedral_angle_4_deg 19.713 r_dihedral_angle_3_deg 19.527 r_dihedral_angle_1_deg 6.58 r_scangle_it 2.848 r_scbond_it 1.842 r_angle_refined_deg 1.441 r_mcangle_it 1.227 r_mcbond_it 0.828 r_symmetry_hbond_refined 0.266 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5752 Nucleic Acid Atoms Solvent Atoms 267 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing SHELX phasing SOLVE phasing RESOLVE phasing MLPHARE phasing