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X-ray structure of human CDK6-Vcyclin in complex with the inhibitor PD0332991
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 295 50 mM Tris/HCl pH 8.0, 0.1 M CaAcetate, 10% PEG3350, 10 mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.56 51.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.146 α = 90 b = 71.146 β = 90 c = 446.876 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 93.6 14553 13633
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 63.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 20 14553 12886 675 0.23274 0.22896 0.2249 0.30597 0.2267 RANDOM 53.289
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.47 1.24 2.47 -3.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.622 r_dihedral_angle_4_deg 22.765 r_dihedral_angle_3_deg 20.253 r_dihedral_angle_1_deg 6.005 r_scangle_it 1.541 r_angle_refined_deg 1.429 r_scbond_it 0.939 r_mcangle_it 0.729 r_mcbond_it 0.406 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.622 r_dihedral_angle_4_deg 22.765 r_dihedral_angle_3_deg 20.253 r_dihedral_angle_1_deg 6.005 r_scangle_it 1.541 r_angle_refined_deg 1.429 r_scbond_it 0.939 r_mcangle_it 0.729 r_mcbond_it 0.406 r_nbtor_refined 0.318 r_nbd_refined 0.247 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.107 r_bond_refined_d 0.012 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4041 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling AMoRE phasing