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Crystal Structure of MDC1 Tandem BRCT Domains
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293 MES 0.1M, PEG 8000 15%, ETHYLENE GLYCOL 15%, AMMONIUM ACETATE 0.2M, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.12 41.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.89 α = 70.98 b = 44.35 β = 86.45 c = 63.1 γ = 61.91
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97954, 0.97967, 0.98120 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 36.84 85639 85639
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.364
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.33 59.34 85639 81339 4300 98.95 0.201 0.20279 0.20158 0.1992 0.22574 0.225 RANDOM 14.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.08 0.16 -0.15 -0.5 0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.99 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 11.655 r_dihedral_angle_1_deg 5.843 r_scangle_it 2.757 r_scbond_it 1.884 r_mcangle_it 1.325 r_angle_refined_deg 1.296 r_mcbond_it 0.825 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.99 r_dihedral_angle_4_deg 15.939 r_dihedral_angle_3_deg 11.655 r_dihedral_angle_1_deg 5.843 r_scangle_it 2.757 r_scbond_it 1.884 r_mcangle_it 1.325 r_angle_refined_deg 1.296 r_mcbond_it 0.825 r_nbtor_refined 0.311 r_symmetry_hbond_refined 0.223 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.123 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2999 Nucleic Acid Atoms Solvent Atoms 441 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing