☰ Navigation Tabs
CRYSTAL STRUCTURE OF A BACTERIAL DOMAIN OF UNKNOWN FUNCTION FROM DUF1798 FAMILY (MW1337) FROM STAPHYLOCOCCUS AUREUS SUBSP. AUREUS AT 2.25 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 7 277 0.2M MgCl2, 2.5M NaCl, 0.1M Tris, pH 7.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.99 58.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.473 α = 90 b = 93.473 β = 90 c = 101.164 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors. K-B geometry 2005-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97942 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 29.29 100 0.13 0.13 3.9 14.9 8245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.31 100 0.976 0.976 0.7 15.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.25 29.29 7863 382 99.92 0.177 0.175 0.1868 0.217 0.2161 RANDOM 49.769
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.34 -0.67 -1.34 2.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.348 r_dihedral_angle_3_deg 16.083 r_dihedral_angle_4_deg 9.441 r_scangle_it 8.205 r_scbond_it 6.736 r_dihedral_angle_1_deg 6.07 r_mcangle_it 3.196 r_mcbond_it 2.202 r_angle_refined_deg 1.357 r_angle_other_deg 0.804
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.348 r_dihedral_angle_3_deg 16.083 r_dihedral_angle_4_deg 9.441 r_scangle_it 8.205 r_scbond_it 6.736 r_dihedral_angle_1_deg 6.07 r_mcangle_it 3.196 r_mcbond_it 2.202 r_angle_refined_deg 1.357 r_angle_other_deg 0.804 r_mcbond_other 0.53 r_symmetry_hbond_refined 0.274 r_symmetry_vdw_other 0.245 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.205 r_nbtor_refined 0.19 r_xyhbond_nbd_refined 0.181 r_nbd_other 0.174 r_nbtor_other 0.088 r_chiral_restr 0.069 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 949 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELXD phasing autoSHARP phasing