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Crystal structure of Thermus aquaticus Gfh1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 295 50mM sodium Cacodylate pH 6.0,
10 mM magnesium sulfate,
1.9 M lithium sulfate
1% ethylene glycol, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.67 66.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 191.2 α = 90 b = 76.4 β = 101.9 c = 53.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD 2003-06-30 M SINGLE WAVELENGTH 2 1 x-ray 77 CCD 2003-10-23 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.9795 NSLS X9A 2 SYNCHROTRON NSLS BEAMLINE X25 0.97857,0.97885,0.96486 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 3.2 30 99.2 0.064 18.5 12359 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.2 3.31 99 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3.3 30 11394 9498 1020 92.47 0.25742 0.25026 0.2618 0.32464 0.3101 RANDOM 42.835
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.46 2.22 0.36 4.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.531 r_scangle_it 6.001 r_scbond_it 3.533 r_angle_refined_deg 3.009 r_mcangle_it 2.546 r_mcbond_it 1.363 r_symmetry_vdw_refined 0.41 r_nbd_refined 0.377 r_symmetry_hbond_refined 0.369 r_xyhbond_nbd_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 8.531 r_scangle_it 6.001 r_scbond_it 3.533 r_angle_refined_deg 3.009 r_mcangle_it 2.546 r_mcbond_it 1.363 r_symmetry_vdw_refined 0.41 r_nbd_refined 0.377 r_symmetry_hbond_refined 0.369 r_xyhbond_nbd_refined 0.302 r_chiral_restr 0.174 r_bond_refined_d 0.033 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3550 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MLPHARE phasing