☰ Navigation Tabs
Crystal Structure of Conserved Protein of Unknown Function TM0937- a Potential Transcriptional Factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.1 293 0.4M CaCL2, 20% PEG3350, pH 5.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.07 59.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.648 α = 90 b = 50.648 β = 90 c = 114.396 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794807 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 43.85 99.59 0.097 0.097 23.13 9.9 7651 7620
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.34 100 0.973 0.973 2.93 10.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT none 2.3 43.85 7651 7620 369 99.59 0.22786 0.2257 0.27034 0.2204 RANDOM 44.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2 1 2 -3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.959 r_dihedral_angle_3_deg 20.222 r_dihedral_angle_4_deg 16.841 r_dihedral_angle_1_deg 9.774 r_scangle_it 5.913 r_scbond_it 4.22 r_mcangle_it 2.441 r_mcbond_it 2.217 r_angle_refined_deg 2.163 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.959 r_dihedral_angle_3_deg 20.222 r_dihedral_angle_4_deg 16.841 r_dihedral_angle_1_deg 9.774 r_scangle_it 5.913 r_scbond_it 4.22 r_mcangle_it 2.441 r_mcbond_it 2.217 r_angle_refined_deg 2.163 r_nbtor_refined 0.312 r_symmetry_vdw_refined 0.309 r_nbd_refined 0.263 r_symmetry_hbond_refined 0.223 r_chiral_restr 0.184 r_xyhbond_nbd_refined 0.159 r_bond_refined_d 0.028 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 933 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing ARP/wARP model building