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Lotus tetragonolobus seed lectin (Isoform)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 293 8% PEG 3350, 20% Isopropanol, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.892 α = 90 b = 65.835 β = 92 c = 102.537 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2006-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.43 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40.42 99.4 0.095 0.095 10.8 3.6 61847
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 0.459 0.459 3.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 34.46 58701 3128 99.38 0.1914 0.18818 0.1872 0.25083 0.2467 RANDOM 22.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.503 r_dihedral_angle_4_deg 17.811 r_dihedral_angle_3_deg 16.802 r_dihedral_angle_1_deg 11.401 r_scangle_it 4.31 r_scbond_it 2.985 r_angle_refined_deg 2.201 r_mcangle_it 1.801 r_mcbond_it 1.112 r_angle_other_deg 0.467
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.503 r_dihedral_angle_4_deg 17.811 r_dihedral_angle_3_deg 16.802 r_dihedral_angle_1_deg 11.401 r_scangle_it 4.31 r_scbond_it 2.985 r_angle_refined_deg 2.201 r_mcangle_it 1.801 r_mcbond_it 1.112 r_angle_other_deg 0.467 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.307 r_nbd_refined 0.269 r_symmetry_hbond_refined 0.263 r_nbtor_other 0.262 r_chiral_restr 0.209 r_xyhbond_nbd_refined 0.184 r_nbd_other 0.164 r_mcbond_other 0.129 r_symmetry_vdw_other 0.108 r_metal_ion_refined 0.106 r_bond_refined_d 0.021 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7228 Nucleic Acid Atoms Solvent Atoms 598 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement MAR345 data collection MOSFLM data reduction SCALA data scaling MOLREP phasing