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FACTOR XA IN COMPLEX WITH THE INHIBITOR (1S,2R,4S)-N1-[(5-chloroindol-2-yl)carbonyl]-4-(N,N-dimethylcarbamoyl)-N2-[(5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl)carbonyl]-1,2-cyclohexanediamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion, hanging drop, seeding 5 293 soaking method at pH 7, pH 5.00, vapor diffusion, hanging drop, seeding, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 50.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.217 α = 90 b = 72.19 β = 90 c = 79.325 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS VII confocal mirror 2006-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 29.57 99.6 0.054 13.9 3.52 19353 33.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 99.9 0.3 3.7 3.47 1900
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 1FAX 2.1 25 18346 998 100 0.20753 0.20518 0.25027 RANDOM 34.676
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 -1.21 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.13 r_dihedral_angle_4_deg 23.596 r_dihedral_angle_3_deg 13.373 r_dihedral_angle_1_deg 6.78 r_scangle_it 2.875 r_mcangle_it 2.448 r_scbond_it 1.973 r_angle_refined_deg 1.864 r_mcbond_it 1.519 r_nbtor_refined 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.13 r_dihedral_angle_4_deg 23.596 r_dihedral_angle_3_deg 13.373 r_dihedral_angle_1_deg 6.78 r_scangle_it 2.875 r_mcangle_it 2.448 r_scbond_it 1.973 r_angle_refined_deg 1.864 r_mcbond_it 1.519 r_nbtor_refined 0.32 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.169 r_chiral_restr 0.129 r_metal_ion_refined 0.116 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2168 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling REFMAC phasing