☰ Navigation Tabs
FACTOR XA IN COMPLEX WITH THE INHIBITOR (-)-cis-N1-[(5-Chloroindol-2-yl)carbonyl]-N2-[(5-methyl-4,5,6,7-tetrahydrothiazolo[5,4-c]pyridin-2-yl)carbonyl]-1,2-cyclohexanediamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FAX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion, hanging drop, seeding 5 293 pH 5.00, vapor diffusion, hanging drop, seeding, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.805 α = 90 b = 72.971 β = 90 c = 79.552 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU RAXIS IIC 1999-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.542
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 33.16 98.5 0.067 12.6 3.55 15017 41.27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.38 96.9 0.325 3.58 3.58 1460
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION RIGID BODY REFINEMENT THROUGHOUT 1FAX 2.3 25 14255 753 100 0.20006 0.19685 0.26204 RANDOM 39.543
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 -1.76 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.542 r_dihedral_angle_4_deg 24.342 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_1_deg 7.119 r_scangle_it 2.694 r_mcangle_it 2.395 r_angle_refined_deg 1.853 r_scbond_it 1.792 r_mcbond_it 1.413 r_nbtor_refined 0.318
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.542 r_dihedral_angle_4_deg 24.342 r_dihedral_angle_3_deg 16.551 r_dihedral_angle_1_deg 7.119 r_scangle_it 2.694 r_mcangle_it 2.395 r_angle_refined_deg 1.853 r_scbond_it 1.792 r_mcbond_it 1.413 r_nbtor_refined 0.318 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.216 r_symmetry_hbond_refined 0.207 r_xyhbond_nbd_refined 0.178 r_metal_ion_refined 0.141 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2140 Nucleic Acid Atoms Solvent Atoms 65 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection d*TREK data reduction d*TREK data scaling REFMAC phasing