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Solution Structure of Second PDZ domain of PDZ Domain Containing Protein 1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_15N-separated_NOESY 3.36mM PDZ domain U-13C,15N; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D20, 90% H2O 10% D20, 90% H2O 120mM 7.0 ambient 298 2 3D_13C-separated_NOESY 3.36mM PDZ domain U-13C,15N; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D20, 90% H2O 10% D20, 90% H2O 120mM 7.0 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations, target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker 2 processing NMRPipe 20031121 Delaglio, F. 3 data analysis NMRView 5.0.4 Johnson, B.A. 4 data analysis KUJIRA 0.9820 Kobayashi, N. 5 structure solution CYANA 2.0.17 Guntert, P. 6 refinement CYANA 2.0.17 Guntert, P.