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Azide bound to copper containing nitrite reductase from A. faecalis S-6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 298 6-8 % PEG 4000, 0.1M sodium acetate buffer pH 4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.75 α = 90 b = 102.582 β = 90 c = 146 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1.08 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 84.52 0.052 17.5 2.7 145022 145022 14.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 99.3 0.202 5.9 0.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 30 137746 137746 7274 97.51 0.16468 0.16391 0.1633 0.17919 0.178 RANDOM 14.768
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 -0.36 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.08 r_dihedral_angle_4_deg 16.93 r_dihedral_angle_3_deg 11.361 r_dihedral_angle_1_deg 6.69 r_scangle_it 1.59 r_angle_refined_deg 1.096 r_scbond_it 1.04 r_mcangle_it 0.63 r_mcbond_it 0.393 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.08 r_dihedral_angle_4_deg 16.93 r_dihedral_angle_3_deg 11.361 r_dihedral_angle_1_deg 6.69 r_scangle_it 1.59 r_angle_refined_deg 1.096 r_scbond_it 1.04 r_mcangle_it 0.63 r_mcbond_it 0.393 r_nbtor_refined 0.305 r_nbd_refined 0.175 r_symmetry_vdw_refined 0.169 r_xyhbond_nbd_refined 0.076 r_chiral_restr 0.073 r_symmetry_hbond_refined 0.063 r_metal_ion_refined 0.029 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7677 Nucleic Acid Atoms Solvent Atoms 1105 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing