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Crystal structure of the holo form of glutaredoxin C1 from populus tremula x tremuloides
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 277 20% PEG6000, 0.1M CITRIC ACID, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.54 51.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.774 α = 90 b = 97.774 β = 90 c = 91.51 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE BRUKER DIP-6040B 2004-10-29 M SINGLE WAVELENGTH 2 1 x-ray 95 CCD ADSC QUANTUM 315 2004-11-06 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 0.9 SPring-8 BL44XU 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.7399, 1.7415, 1.6000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 50 100 0.062 11.4 28968 31.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.18 100 0.345 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 24.75 27449 1469 99.89 0.18591 0.18406 0.2018 0.22039 0.227 RANDOM 34.617
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.11 0.22 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.169 r_dihedral_angle_4_deg 20.187 r_dihedral_angle_3_deg 15.974 r_dihedral_angle_1_deg 6.056 r_scangle_it 3.555 r_scbond_it 3.14 r_angle_refined_deg 1.476 r_mcangle_it 1.438 r_mcbond_it 0.899 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.169 r_dihedral_angle_4_deg 20.187 r_dihedral_angle_3_deg 15.974 r_dihedral_angle_1_deg 6.056 r_scangle_it 3.555 r_scbond_it 3.14 r_angle_refined_deg 1.476 r_mcangle_it 1.438 r_mcbond_it 0.899 r_nbtor_refined 0.295 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.19 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.132 r_chiral_restr 0.095 r_bond_refined_d 0.017 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3262 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling SHARP phasing