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Crystal Structure of the Cytochrome b6f Complex with tridecyl-stigmatellin (TDS) from M.laminosus
Crystallization Crystal Properties Matthews coefficient Solvent content 6.017107 79.558281
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 157.227 α = 90 b = 157.227 β = 90 c = 363.295 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-11-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97856 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 41.3 99.8 0.117 7.1 37057 -3 97.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.41 41.27 35129 1852 99.68 0.18822 0.18473 0.1824 0.25563 0.2514 RANDOM 62.768
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 0.51 1.02 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.162 r_dihedral_angle_3_deg 27.18 r_dihedral_angle_4_deg 25.672 r_scangle_it 21.711 r_scbond_it 16.754 r_dihedral_angle_1_deg 12.51 r_mcangle_it 10.05 r_mcbond_it 6.938 r_angle_refined_deg 4.042 r_nbd_refined 0.397
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.162 r_dihedral_angle_3_deg 27.18 r_dihedral_angle_4_deg 25.672 r_scangle_it 21.711 r_scbond_it 16.754 r_dihedral_angle_1_deg 12.51 r_mcangle_it 10.05 r_mcbond_it 6.938 r_angle_refined_deg 4.042 r_nbd_refined 0.397 r_nbtor_refined 0.386 r_symmetry_hbond_refined 0.37 r_symmetry_vdw_refined 0.33 r_xyhbond_nbd_refined 0.249 r_chiral_restr 0.242 r_metal_ion_refined 0.235 r_bond_refined_d 0.037 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7467 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 640
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing