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Crystal Structure of the Cytochrome b6f Complex from M.laminosus
Crystallization Crystal Properties Matthews coefficient Solvent content 6.06715 79.726891
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 158.343 α = 90 b = 158.343 β = 90 c = 361.094 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97934 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 137.4 99.7 0.073 4.2 54187 -3 96.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 39.3 51446 2740 99.65 0.22454 0.22224 0.2193 0.26843 0.2652 RANDOM 66.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 0.66 1.19 -1.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.221 r_dihedral_angle_3_deg 17.508 r_dihedral_angle_4_deg 15.386 r_scangle_it 13.579 r_scbond_it 9.887 r_mcangle_it 6.49 r_dihedral_angle_1_deg 6.356 r_mcbond_it 4.328 r_angle_refined_deg 1.887 r_symmetry_vdw_refined 0.384
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.221 r_dihedral_angle_3_deg 17.508 r_dihedral_angle_4_deg 15.386 r_scangle_it 13.579 r_scbond_it 9.887 r_mcangle_it 6.49 r_dihedral_angle_1_deg 6.356 r_mcbond_it 4.328 r_angle_refined_deg 1.887 r_symmetry_vdw_refined 0.384 r_nbtor_refined 0.351 r_nbd_refined 0.337 r_xyhbond_nbd_refined 0.204 r_metal_ion_refined 0.183 r_symmetry_hbond_refined 0.163 r_chiral_restr 0.118 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7439 Nucleic Acid Atoms Solvent Atoms 5 Heterogen Atoms 581
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing