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Epsilon subunit and ATP complex of F1F0-ATP synthase from the Thermophilic Bacillus PS3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AQT PDB ENTRY 1AQT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 5% PEG 6000, 0.1M citric acid, pH 4.0, Vapor diffusion, hanging drop, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.17 43.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.48 α = 90 b = 64.917 β = 90 c = 103.944 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker DIP-6040 2004-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 10 92.5 17451 27.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AQT 1.92 10 17451 948 92.47 0.20211 0.2 0.1992 0.25 0.2466 RANDOM 29.821
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 1.74 -1.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.059 r_dihedral_angle_4_deg 23.676 r_dihedral_angle_3_deg 16.799 r_dihedral_angle_1_deg 6.064 r_scangle_it 4.599 r_scbond_it 2.944 r_angle_refined_deg 2.208 r_mcangle_it 2.061 r_mcbond_it 1.286 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.059 r_dihedral_angle_4_deg 23.676 r_dihedral_angle_3_deg 16.799 r_dihedral_angle_1_deg 6.064 r_scangle_it 4.599 r_scbond_it 2.944 r_angle_refined_deg 2.208 r_mcangle_it 2.061 r_mcbond_it 1.286 r_nbtor_refined 0.303 r_chiral_restr 0.3 r_nbd_refined 0.22 r_symmetry_vdw_refined 0.189 r_xyhbond_nbd_refined 0.183 r_symmetry_hbond_refined 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2042 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling