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Crystal structure of SET/TAF-1beta/INHAT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.4 293 2.75M Ammonium sulfate, 0.1M sodium citrate buffer, 0.2M potassium/sodium tartrate, 30mM MgCl2, pH 5.4, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.913 α = 90 b = 64.435 β = 90.85 c = 124.421 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-28 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 315 2004-05-27 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0 Photon Factory BL-6A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 0.9791, 0.9794, 0.9850, 0.9740 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 36.25 96.8 0.048 12.3 3.1 54757
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.18 93.4 0.42 2.7 5265
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.3 20 39770 2104 97.2 0.22 0.218 0.2107 0.271 0.2629 RANDOM 47.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.56 -1.17 -1.27 3.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.185 r_dihedral_angle_3_deg 18.483 r_dihedral_angle_4_deg 15.909 r_dihedral_angle_1_deg 6.053 r_scangle_it 3.77 r_scbond_it 2.405 r_mcangle_it 1.579 r_angle_refined_deg 1.499 r_mcbond_it 0.979 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.185 r_dihedral_angle_3_deg 18.483 r_dihedral_angle_4_deg 15.909 r_dihedral_angle_1_deg 6.053 r_scangle_it 3.77 r_scbond_it 2.405 r_mcangle_it 1.579 r_angle_refined_deg 1.499 r_mcbond_it 0.979 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.246 r_symmetry_vdw_refined 0.232 r_nbd_refined 0.213 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5841 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 92
Software Software Software Name Purpose SHARP phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling