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Crystal structure of BphA3 (oxidized form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FQT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 2.55M ammonium sulfate, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 49.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.294 α = 90 b = 144.113 β = 90 c = 61.176 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 315 mirrors 2006-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-5A 1.0000 Photon Factory BL-5A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 17 96.7 0.086 9.92 2.56 16179
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.1 98.2 0.353 3.32 2.46 4024
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FQT 2 16.65 16179 16179 809 100 0.20996 0.20996 0.20764 0.2088 0.25407 0.2562 RANDOM 20.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.82 0.44 0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_4_deg 15.105 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 5.478 r_scangle_it 2.557 r_scbond_it 1.596 r_angle_refined_deg 1.401 r_mcangle_it 1.073 r_mcbond_it 0.659 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.918 r_dihedral_angle_4_deg 15.105 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 5.478 r_scangle_it 2.557 r_scbond_it 1.596 r_angle_refined_deg 1.401 r_mcangle_it 1.073 r_mcbond_it 0.659 r_nbtor_refined 0.304 r_nbd_refined 0.195 r_symmetry_vdw_refined 0.165 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.081 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1711 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement ADSC data collection XDS data reduction XDS data scaling MOLREP phasing