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TPR domain of NrfG mediates the complex formation between heme lyase and formate-dependent nitrite reductase in Escherichia Coli O157:H7
Crystallization Crystal Properties Matthews coefficient Solvent content 2.6 52.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.802 α = 90 b = 85.824 β = 89.99 c = 49.073 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 2005-05-13 M MAD 2 1 x-ray CCD ADSC QUANTUM 210 2005-05-13 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 0.97950, 0.97956, 0.97171 PAL/PLS 4A 2 SYNCHROTRON PAL/PLS BEAMLINE 6B PAL/PLS 6B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.05 45 98.65 22119
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.05 2.1 95.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.05 45 22119 2450 98.65 0.23499 0.23126 0.2316 0.268 0.2664 RANDOM 46.528
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.07 -0.01 -1.97 -3.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.864 r_dihedral_angle_4_deg 21.86 r_dihedral_angle_3_deg 18.199 r_dihedral_angle_1_deg 8.395 r_scangle_it 3.141 r_scbond_it 2.071 r_angle_refined_deg 1.433 r_mcangle_it 1.204 r_mcbond_it 0.746 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.864 r_dihedral_angle_4_deg 21.86 r_dihedral_angle_3_deg 18.199 r_dihedral_angle_1_deg 8.395 r_scangle_it 3.141 r_scbond_it 2.071 r_angle_refined_deg 1.433 r_mcangle_it 1.204 r_mcbond_it 0.746 r_nbtor_refined 0.303 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.211 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.106 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2812 Nucleic Acid Atoms Solvent Atoms 190 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing