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The Crystal Structure of XC1258 from Xanthomonas campestris: A CN-hydrolase Superfamily Protein with an Arsenic Adduct in the Active Site
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.28 α = 90 b = 154.305 β = 90 c = 51.158 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-06-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 0.97905, 0.96108 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 104.83 98.4 0.14 0.04 9 5.2 112277 5 2 27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 104.83 95.3 0.14 0.14 9.1 4.5 11276
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.73 104.83 2 5 110854 5865 97.21 0.18789 0.18636 0.14 0.21746 RANDOM 14.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.37 0.01 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.959 r_dihedral_angle_4_deg 15.966 r_dihedral_angle_3_deg 13.407 r_dihedral_angle_1_deg 6.165 r_scangle_it 3.464 r_scbond_it 2.287 r_angle_refined_deg 1.345 r_mcangle_it 1.336 r_mcbond_it 0.804 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.959 r_dihedral_angle_4_deg 15.966 r_dihedral_angle_3_deg 13.407 r_dihedral_angle_1_deg 6.165 r_scangle_it 3.464 r_scbond_it 2.287 r_angle_refined_deg 1.345 r_mcangle_it 1.336 r_mcbond_it 0.804 r_nbtor_refined 0.311 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.164 r_symmetry_hbond_refined 0.124 r_chiral_restr 0.098 r_bond_refined_d 0.011 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8452 Nucleic Acid Atoms Solvent Atoms 740 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction HKL-2000 data scaling SOLVE phasing