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Solution structure of the first chromodomain of yeast Chd1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 0.3-0.5mM chromodomain; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 90% H2O/10% D2O 300mM NaCl 6.8 ambient 298 2 2D NOESY 0.3-0.5mM chromodomain; 20mM potassium phosphate buffer; 30mM d-DTT; 100% D2O 100% D2O 300mM NaCl 6.8 ambient 298 3 3D_15N-separated_NOESY 0.3-0.5mM chromodomain U-15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 290% H2O, 10% D2O 300mM NaCl 6.8 ambient 298 4 3D_13C-separated_NOESY 0.3-0.5mM chromodomain U-13C,15N; 20mM potassium phosphate buffer; 30mM d-DTT; 100% D2O 100% D2O 300mM NaCl 6.8 ambient 298 5 HNHA 0.3-0.5mM chromodomain U-15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 290% H2O, 10% D2O 300mM NaCl 6.8 ambient 298 6 HNHB 0.3-0.5mM chromodomain U-13C,15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 90% H2O/10% D2O 300mM NaCl 6.8 ambient 298 7 HN(CO)HB 0.3-0.5mM chromodomain U-13C,15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 90% H2O/10% D2O 300mM NaCl 6.8 ambient 298 8 HNCG 0.3-0.5mM chromodomain U-13C,15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 90% H2O/10% D2O 300mM NaCl 6.8 ambient 298 9 HN(CO)CG 0.3-0.5mM chromodomain U-13C,15N; 20mM potassium phosphate buffer; 30mM d-DTT; 90% H2O, 10% D2O 90% H2O/10% D2O 300mM NaCl 6.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 600 3 Bruker AVANCE 800
NMR Refinement Method Details Software distance geometry, simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2 processing NMRPipe Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A. 3 data analysis NMRView Johnson, B.A., Blevins, R.A. 4 structure solution X-PLOR Brunger, A.T. 5 refinement X-PLOR Brunger, A.T.