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Crystal Structure Analysis of GGA1-GAE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IU1 PDB ENTRY 1IU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG3350, DI-AMMONIUM TARTRATE, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.38 48.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.482 α = 90 b = 88.238 β = 96.1 c = 67.224 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-05-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.8 0.056 12.4 3.5 24237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 93.2 0.296
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1IU1 2.3 41.52 22062 1182 96 0.219 0.217 0.2207 0.257 0.227 RANDOM 44.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 1.01 3.69 -2.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.199 r_scangle_it 3.009 r_mcangle_it 1.795 r_scbond_it 1.724 r_angle_refined_deg 1.356 r_mcbond_it 0.965 r_angle_other_deg 0.831 r_nbd_other 0.24 r_nbd_refined 0.228 r_symmetry_vdw_other 0.215
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.199 r_scangle_it 3.009 r_mcangle_it 1.795 r_scbond_it 1.724 r_angle_refined_deg 1.356 r_mcbond_it 0.965 r_angle_other_deg 0.831 r_nbd_other 0.24 r_nbd_refined 0.228 r_symmetry_vdw_other 0.215 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.16 r_symmetry_hbond_refined 0.155 r_nbtor_other 0.086 r_chiral_restr 0.079 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4083 Nucleic Acid Atoms Solvent Atoms 148 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling