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Crystal structure of hypothetical protein, PH0823
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 28% Pentaerythritol Ethoxylate (5/4 PO/OH), pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.96 58.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.786 α = 90 b = 120.786 β = 90 c = 127.098 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2005-05-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.97921, 0.9795, 0.964 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 45 87.16 0.08 14.5675 5.83957 20726 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.88 30.88 0.345 1.86869 559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.75 40 20723 1102 87.19 0.21867 0.21554 0.208 0.27918 0.2193 RANDOM 58.737
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.77 0.77 -1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.47 r_dihedral_angle_3_deg 26.093 r_dihedral_angle_4_deg 23.018 r_dihedral_angle_1_deg 9.173 r_scangle_it 6.035 r_scbond_it 3.621 r_angle_refined_deg 2.993 r_mcangle_it 2.723 r_mcbond_it 1.574 r_symmetry_vdw_refined 0.424
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.47 r_dihedral_angle_3_deg 26.093 r_dihedral_angle_4_deg 23.018 r_dihedral_angle_1_deg 9.173 r_scangle_it 6.035 r_scbond_it 3.621 r_angle_refined_deg 2.993 r_mcangle_it 2.723 r_mcbond_it 1.574 r_symmetry_vdw_refined 0.424 r_nbtor_refined 0.359 r_nbd_refined 0.323 r_symmetry_hbond_refined 0.3 r_xyhbond_nbd_refined 0.229 r_chiral_restr 0.178 r_bond_refined_d 0.035 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4659 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing