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Ternary complex of BphK, a bacterial GST
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F2E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 1.0M K/NA tartrate, 0.1M MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3 58.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.2 α = 90 b = 112.2 β = 90 c = 221.9 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2006-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 95 0.058 4.5 54562 42
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 0.54 2.9 3778
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1F2E 2.1 44.5 54562 2918 94.52 0.20471 0.20305 0.2025 0.23625 0.2316 RANDOM 42.677
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 -0.21 -0.42 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.091 r_dihedral_angle_4_deg 20.331 r_dihedral_angle_3_deg 16.539 r_dihedral_angle_1_deg 5.111 r_scangle_it 2.376 r_scbond_it 1.495 r_angle_refined_deg 1.259 r_mcangle_it 1.18 r_mcbond_it 0.665 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.091 r_dihedral_angle_4_deg 20.331 r_dihedral_angle_3_deg 16.539 r_dihedral_angle_1_deg 5.111 r_scangle_it 2.376 r_scbond_it 1.495 r_angle_refined_deg 1.259 r_mcangle_it 1.18 r_mcbond_it 0.665 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.247 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.141 r_chiral_restr 0.082 r_symmetry_hbond_refined 0.062 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6224 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 144
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing