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Structural basis for the recognition of Lys48-linked polyubiquitin chain by the Josephin domain of ataxin-3, a putative deubiquitinating enzyme
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.2mM Josephin domain U-15N,13C; 10mM Sodium phosphate buffer; 90% H2O, 10% D2O 90% H2O/10% D2O 10mM Sodium phosphate buffer 7.0 1 atm 303 2 3D_15N-separated_NOESY 1.2mM Josephin domain U-15N,13C; 10mM Sodium phosphate buffer; 90% H2O, 10% D2O 90% H2O/10% D2O 10mM Sodium phosphate buffer 7.0 1 atm 303 3 2D NOESY 1.2mM Josephin domain U-15N,13C; 10mM Sodium phosphate buffer; 99% D2O 99% D2O 10mM Sodium phosphate buffer 7.0 1 atm 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 JEOL ECA 920 2 Bruker AVANCE 600 3 Bruker DMX 500
NMR Refinement Method Details Software distance geometry, simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6 2 processing NMRPipe 2.3 Delaglio 3 structure solution CYANA 2.1 Guntert 4 collection Delta 4.3.3 5 refinement CYANA 2.1 Guntert