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crystal structure of Sfi1p/Cdc31p complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 277 9% iso-propanol, 0.1M MES pH=6.2, 0.2M Ca(OAc)2, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.8 56.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.283 α = 90 b = 92.961 β = 90 c = 189.358 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2005-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9794, 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.25 94.49 99.7 0.11 3.8 6.8 12505 1.1 1.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.25 3.43 99.7 0.48 0.013 1.3 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3 94.49 1.1 14942 14942 785 99.49 0.26057 0.25857 0.3238 0.29899 0.3691 RANDOM 114.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.13 0.62 -3.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.569 r_dihedral_angle_3_deg 21.354 r_dihedral_angle_4_deg 18.825 r_dihedral_angle_1_deg 5.951 r_scangle_it 1.871 r_scbond_it 1.29 r_angle_refined_deg 1.253 r_mcangle_it 0.836 r_mcbond_it 0.626 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.569 r_dihedral_angle_3_deg 21.354 r_dihedral_angle_4_deg 18.825 r_dihedral_angle_1_deg 5.951 r_scangle_it 1.871 r_scbond_it 1.29 r_angle_refined_deg 1.253 r_mcangle_it 0.836 r_mcbond_it 0.626 r_nbtor_refined 0.316 r_symmetry_hbond_refined 0.285 r_nbd_refined 0.251 r_metal_ion_refined 0.2 r_symmetry_vdw_refined 0.184 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4219 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SnB phasing SHARP phasing