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Crystal structure of the PIN domain of human EST1A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 278 1.26M (NH4)2SO4, 0.1M CHES-NaOH, 0.2M NaCl, pH 9.5, VAPOR DIFFUSION, SITTING DROP, temperature 278.0K
Crystal Properties Matthews coefficient Solvent content 2.87 57.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.326 α = 90 b = 51.586 β = 119.25 c = 100.48 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 2003-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0000 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 45150
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 50 40801 2165 96.11 0.21503 0.21306 0.2228 0.25384 0.2184 RANDOM 27.595
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.88 -0.21 2.15 -0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.625 r_angle_other_deg 3.633 r_scangle_it 3.606 r_mcangle_it 2.856 r_scbond_it 2.095 r_mcbond_it 1.865 r_angle_refined_deg 1.497 r_symmetry_vdw_other 0.361 r_nbd_other 0.276 r_nbd_refined 0.228
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 11.625 r_angle_other_deg 3.633 r_scangle_it 3.606 r_mcangle_it 2.856 r_scbond_it 2.095 r_mcbond_it 1.865 r_angle_refined_deg 1.497 r_symmetry_vdw_other 0.361 r_nbd_other 0.276 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.175 r_symmetry_hbond_refined 0.136 r_nbtor_other 0.106 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2657 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing