2DNO
Solution structure of RNA binding domain in Trinucleotide repeat containing 4 variant
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 1.14mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT,0.02% NaN3;90% H2O, 10% D2O | 90% H2O/10% D2O | 120mM | 7.0 | ambient | 298 | |
2 | 3D_13C-separated_NOESY | 1.14mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT,0.02% NaN3;90% H2O, 10% D2O | 90% H2O/10% D2O | 120mM | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
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Method | Details | Software |
torsion angle dynamics, restrainted molecular dynamics | XwinNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function, structures with the lowest energy, structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker |
2 | processing | NMRPipe | 20030801 | Delaglio,F |
3 | data analysis | NMRView | 5.0.4 | Johnson,B.A |
4 | data analysis | KUJIRA | 0.9742 | Kobayashi,N |
5 | structure solution | CYANA | 2.0.17 | Guntert,P |
6 | refinement | CYANA | 2.0.17 | Guntert,P |