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Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 oil batch 6.4 298 20% PEG 4000, 50mM magnesium chloride, 0.1M MES, pH 6.4, oil batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.253 α = 90 b = 76.075 β = 102.62 c = 79.646 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 2004-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.00000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.9 0.07 51.9 45006
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 84.1 84.1 0.179
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 34.16 45006 44983 2216 97.9 0.183 0.181 0.224 0.2445 RANDOM 26.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.01 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.075 r_dihedral_angle_4_deg 16.634 r_dihedral_angle_3_deg 12.861 r_scangle_it 6.225 r_dihedral_angle_1_deg 5.213 r_scbond_it 4.352 r_mcangle_it 2.747 r_mcbond_it 2.086 r_angle_refined_deg 1.115 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.075 r_dihedral_angle_4_deg 16.634 r_dihedral_angle_3_deg 12.861 r_scangle_it 6.225 r_dihedral_angle_1_deg 5.213 r_scbond_it 4.352 r_mcangle_it 2.747 r_mcbond_it 2.086 r_angle_refined_deg 1.115 r_nbtor_refined 0.297 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.157 r_symmetry_hbond_refined 0.151 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.067 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5079 Nucleic Acid Atoms Solvent Atoms 600 Heterogen Atoms 132
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data scaling CNS phasing