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Crystal structure of rat carnitine palmitoyltransferase 2 in space group C2221
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 294 0.15M DL-malic acid 20% (w/v) PEG 3350 , pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.42 49.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 95.18 α = 90 b = 97.29 β = 90 c = 310.44 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-08-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97899 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 23 0.062 14.04 189041 188487
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 99.8 0.212 7.24 28337
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 23 179022 9462 99.75 0.16655 0.16512 0.1749 0.19375 0.2021 RANDOM 16.488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.29 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.66 r_dihedral_angle_4_deg 14.676 r_dihedral_angle_3_deg 11.533 r_scangle_it 6.808 r_dihedral_angle_1_deg 5.601 r_scbond_it 4.767 r_mcangle_it 3.083 r_mcbond_it 2.404 r_angle_refined_deg 1.227 r_angle_other_deg 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.66 r_dihedral_angle_4_deg 14.676 r_dihedral_angle_3_deg 11.533 r_scangle_it 6.808 r_dihedral_angle_1_deg 5.601 r_scbond_it 4.767 r_mcangle_it 3.083 r_mcbond_it 2.404 r_angle_refined_deg 1.227 r_angle_other_deg 0.79 r_mcbond_other 0.714 r_symmetry_vdw_other 0.246 r_nbd_refined 0.216 r_nbtor_refined 0.183 r_nbd_other 0.181 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.134 r_symmetry_hbond_refined 0.131 r_nbtor_other 0.084 r_chiral_restr 0.072 r_bond_refined_d 0.014 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10068 Nucleic Acid Atoms Solvent Atoms 1364 Heterogen Atoms 110
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling PHASER phasing