2DA1
Solution structure of the first homeobox domain of AT-binding transcription factor 1 (ATBF1)
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 1.2mM protein U-15N,13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O | 90% H2O/10% D2O | 120mM | 7.0 | ambient | 296 | |
2 | 3D_15N-separated_NOESY | 1.2mM protein U-15N,13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O | 90% H2O/10% D2O | 120mM | 7.0 | ambient | 296 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics, restrained molecular dynamics | XwinNMR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function,structures with the lowest energy,structures with the least restraint violations |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | XwinNMR | 3.5 | Bruker |
2 | processing | NMRPipe | 20030801 | Delaglio, F. |
3 | data analysis | NMRView | 5.0.4 | Johnson, B.A. |
4 | data analysis | KUJIRA | 0.932 | Kobayashi, N. |
5 | structure solution | CYANA | 2.0.17 | Guntert, P. |
6 | refinement | CYANA | 2.0.17 | Guntert, P. |