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Crystal structure of A lectin from canavalia gladiata seeds complexed with alpha-methyl-mannoside and alpha-aminobutyric acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 ammonium sulphate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.45 64.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.915 α = 90 b = 115.754 β = 90 c = 241.626 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LNLS BEAMLINE D03B-MX1 1.43 LNLS D03B-MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.309 51.988 99.1 0.073 4.5 61808 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.31 2.41 94.5 0.354
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 9.99 2 61808 57826 3097 99.22 0.18206 0.17964 0.22683 0.2151 RANDOM 21.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.03 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.634 r_dihedral_angle_4_deg 21.277 r_dihedral_angle_3_deg 17.106 r_dihedral_angle_1_deg 9.237 r_scangle_it 4.385 r_scbond_it 2.909 r_angle_refined_deg 2.363 r_mcangle_it 2.196 r_mcbond_it 1.312 r_angle_other_deg 1.066
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.634 r_dihedral_angle_4_deg 21.277 r_dihedral_angle_3_deg 17.106 r_dihedral_angle_1_deg 9.237 r_scangle_it 4.385 r_scbond_it 2.909 r_angle_refined_deg 2.363 r_mcangle_it 2.196 r_mcbond_it 1.312 r_angle_other_deg 1.066 r_mcbond_other 0.291 r_symmetry_hbond_refined 0.221 r_symmetry_vdw_other 0.212 r_symmetry_vdw_refined 0.209 r_nbd_other 0.207 r_nbtor_refined 0.194 r_nbd_refined 0.193 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.15 r_nbtor_other 0.112 r_metal_ion_refined 0.111 r_bond_refined_d 0.028 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7220 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing