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Crystal structure of a 49K fragment of HAP1 (FlgK)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.5 289 14-15% PEG 8000, 20-25% isopropanol, 0.1M citrate, pH 5.5, VAPOR DIFFUSION, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.45 49.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.928 α = 90 b = 99.697 β = 90 c = 109.645 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-02-06 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2003-02-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 1.0394 SPring-8 BL41XU 2 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.9797, 0.9799, 0.9735, 0.9843 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 75 97.8 0.063 19.2 5.5 56302 56302
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.21 97.7 0.325 4.6 5.5 9113
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 74.54 56302 56302 2844 97.78 0.22064 0.22064 0.21885 0.2194 0.25504 0.2535 RANDOM 42.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.79 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.757 r_scangle_it 4.128 r_dihedral_angle_1_deg 3.467 r_scbond_it 2.482 r_mcangle_it 1.685 r_angle_refined_deg 1.356 r_mcbond_it 0.902 r_symmetry_hbond_refined 0.386 r_xyhbond_nbd_refined 0.285 r_nbd_refined 0.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.757 r_scangle_it 4.128 r_dihedral_angle_1_deg 3.467 r_scbond_it 2.482 r_mcangle_it 1.685 r_angle_refined_deg 1.356 r_mcbond_it 0.902 r_symmetry_hbond_refined 0.386 r_xyhbond_nbd_refined 0.285 r_nbd_refined 0.269 r_symmetry_vdw_refined 0.222 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6441 Nucleic Acid Atoms Solvent Atoms 775 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SOLVE phasing