X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LYSPDB ENTRY 1LYS

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch method7.63132% protein, 10% sodium chloride, 5% 1-propanol, pH 7.6, batch method, temperature 313K
Crystal Properties
Matthews coefficientSolvent content
1.7830.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 27.217α = 90
b = 63.484β = 92.93
c = 59.189γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray290CCDBRUKER SMART 6000Confocal Max-Flux optics2002-05-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEMACSCIENCE1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.1519.793.90.1194.147138367029
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.151.1762.20.336

Refinement

Statistics
Diffraction IDStructure Solution MethodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTPDB ENTRY 1LYS1.1519.76697633490.1330.1320.164RANDOM
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
s_non_zero_chiral_vol0.093
s_zero_chiral_vol0.08
s_angle_d0.032
s_from_restr_planes0.028
s_bond_d0.015
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2038
Nucleic Acid Atoms
Solvent Atoms249
Heterogen Atoms6

Software

Software
Software NamePurpose
SaintPlusdata reduction
X-PLORmodel building
SHELXL-97refinement
SMARTdata reduction
SAINTPLUSdata scaling
X-PLORphasing